Grasshopper

algorithmic modeling for Rhino

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Translation

Component Index > Alba > Transcription/Translation > Translation

Translates RNA to amino acid chain with options for finding the proper reading frame

Inputs

NameIDDescriptionType
RNARNAContains a collection of text fragmentsString
Domain from larger sequenceSuboptional domain from the larger sequence to establish locations withing the broader contextInterval
Ribosome Binding Site SequenceRBSRibosome Binding Site Sequence as RNA or DNAString
shift frameShiftshift the frame 0,1,or 2 nucleuotidesInteger
Start PointStart0=beginning of input RNA, 1=1st start codon, 2= 2nd start codon, etcInteger
Stop PointStop0=end of input RNA, 1=1st stop codon, 2= 2nd stop codon, etcInteger
VerbosityVinput an integer1-2 to determine the output version of the amino acid identification. 0=one letter, 1=three letter, 2= wordInteger

Outputs

NameIDDescriptionType
Amino Acid SequenceAAFiltered streamGoo
TextCodonsContains a collection of text fragmentsString
Domain of Total DNA SequenceSub DNADomain relative to the location in the total DNA sequence based on the input refernce domainInterval
Domain of RNASub RNANumeric domain between {A} and {B}Interval
Domain of Amino AcidsSub AANumeric domain between {A} and {B}Interval

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